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biomedicina slovenica |
"Bioinformatics" : 145
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Urh Kristian; Zidar Nina; Boštjančič Emanuela
Bioinformatics analysis of RNA-seq data reveals genes related to cancer stem cells in colorectal cancerogenesis
2022 ►
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Balech Bachir; Brennan Lorraine; Carrillo de Santa Pau Enrique; Cavalieri Duccio; Coort Susan; D’Elia Domenica; Ove Dragsted Lars; Ferk Polonca; Hancock John M.; Leskošek Branimir
The future of food and nutrition in ELIXIR
2022 ►
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Pavlič Ana; Hauptman Nina; Boštjančič Emanuela; Zidar Nina
Long non-coding RNAs as potential regulators of EMT-related transcription factors in colorectal cancer
2022 ►
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Bairoch Amos; Cohen-Boulakia Sarah; Froidevaux Christine
Data integration in the life sciences
2008 ►
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Gruenberger Michael; Alberts Rudi; Smedley Damian; Swertz Morris A.; Schofield Paul N.; Schughart Klaus; Hancock John M.
Towards the integration of mouse databases - definition and implementation of solutions to two use-cases in mouse functional genomics
2010 ►
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Smith Barry
ICBO, International Conference on Biomedical Ontology
2011 ►
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Kahlem Pascal; DiCara Alessandro; Durot Maxime; Hancock John M.; Klipp Edda; Schächter Vincent; Segal Eran; Xenarios Ioannis; Birney Ewan
Strengths and weaknesses of selected modeling methods used in systems biology
2011 ►
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Yang Ning-Sun
Systems and computational biology
2011 ►
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Hancock John M.; Gates Hilary
The informatics of high-throughput mouse phenotyping
2011 ►
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Artaza Haydee; Hancock John M.; Jiménez Rafael C.; Corpas Manuel
PIsCO
2017 ►
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Beck Tim; Morgan Hugh; Blake Andrew; Wells Sara; Hancock John M.; Mallon Ann-Marie
Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data
2009 ►
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Webb Alex; Hancock John M.; Holmes Christopher C.
Phylogenetic inference under recombination using Bayesian stochastic topology selection
2009 ►
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Smedley Damian; Swertz Morris A.; Wolstencroft Katy; Proctor Glenn; Zouberakis Michael; Bard Jonathan; Hancock John M.; Schofield Paul N.
Solutions for data integration in functional genomics
2008 ►
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Hancock John M.; Mallon Ann-Marie
Phenobabelomics - mouse phenotype data resources
2007 ►
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Green Eain C. J.; Gkoutos Georgios V.; Lad Heena V.; Blake Andrew; Weekes Joseph; Hancock John M.
EMPReSS
2005 ►
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Gkoutos Georgios V.; Green Eain C. J.; Greenaway Simon; Blake Andrew; Mallon Ann-Marie; Hancock John M.
CRAVE
2005 ►
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Gkoutos Georgios V.; Mallon Ann-Marie; Blake A.; Greenaway Simon; Hancock John M.; Davidson D.
Ontologies for the description of mouse phenotypes
2004 ►
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Gkoutos Georgios V.; Mallon Ann-Marie; Hancock John M.; Davidson Duncan
Using ontologies to describe mouse phenotypes
2004 ►
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Albà M. Mar; Laskowski Roman A.; Hancock John M.
Detecting cryptically simple protein sequences using the SIMPLE algorithm
2002 ►
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Hancock John M.; Armstrong John S.
SIMPLE34
1994 ►
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Hancock John M.; Zvelebil Marketa J.
Concise encyclopaedia of bioinformatics and computational biology
2014 ►
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Hancock John M.; Zvelebil Marketa J.
Dictionary of bioinformatics and computational biology
2004 ►
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Walakira Andrew; Ocira Junior; Duroux Diane; Fouladi Ramouna; Moškon Miha; Rozman Damjana; Van Steen Kristel
Detecting gene‐gene interactions from GWAS using diffusion kernel principal components
2022 ►
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Barba Evaggelia; Tsermpini Evangelia Erini; Patrinos George P.; Koromina Maria
Genome informatics pipelines and genome browsers
2020 ►
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Gašperšič Jernej; Dolžan Vita
Viral and host genetic and epigenetic biomarkers related to SARS-CoV-2 cell entry, infection rate, and disease severity
2022 ►
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Tsermpini Evangelia Erini; Al-Mahayri Zeina N.; Ali Bassam R.; Patrinos George P.
Clinical implementation of drug metabolizing gene-based therapeutic interventions worldwide
2021 ►
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Jerala Miha; Kojc Nika; Hauptman Nina
Expression of fibrosis-related genes in liver and kidney fibrosis in comparison to inflammatory bowel diseases
2022 ►
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Kiraly Peter; Zupan Andrej; Matjašič Alenka; Jaki Mekjavić Polona
Associations of single-nucleotide polymorphisms in Slovenian patients with acute central serous chorioretinopathy
2022 ►
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Rozman Damjana
Systems medicine - basic concepts and research examples
2021 ►
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Jevšinek Skok Daša; Hauptman Nina; Jerala Miha; Zidar Nina
Expression of cytokine-coding genes BMP8B, LEFTY1 and INSL5 could distinguish between ulcerative colitis and Crohn's disease
2021 ►
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Razpotnik Rok; Nassib Petra; Kunej Tanja; Rozman Damjana; Režen Tadeja
Identification of novel RNA binding proteins influencing circular RNA expression in hepatocellular carcinoma
2021 ►
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Dharuri Harish; Henneman Peter; Demirkan Ayse; Klinken Jan Bert v; Mook-Kanamori Dennis Owen; Wang-Sattler Rui; Gieger Christian; Adamski Jerzy; Hettne Kristina M.; Roos Marco
Automated workflow-based exploitation of pathway databases provides new insights into genetic associations of metabolite profiles
2013 ►
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Persson Bengt; Kallberg Yvonne; Bray James E.; Bruford Elspeth; Dellaporta Stephen L.; Favia Angelo D.; Gonzalez Duarte Roser; Jörnvall Hans; Kavanagh Kathryn L.; Adamski Jerzy
The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative
2009 ►
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Molnos Sophie; Baumbach Clemens; Wahl Simone; Müller-Nurasyid Martina; Strauch Konstantin; Wang-Sattler Rui; Waldenberger Melanie; Meitinger Thomas; Adamski Jerzy; Kastenmüller Gabi
pulver
2017 ►
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Schofield Paul N.; Hancock John M.
Integration of global resources for human genetic variation and disease
2012 ►
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Becker Jeremie; Yau Christopher; Hancock John M.; Holmes Christopher C.
NucleoFinder
2013 ►
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Hancock John M.; Game Alf; Ponting Chris; Goble Carole A.
An open and transparent process to select ELIXIR Node Services as implemented by ELIXIR-UK
2016 ►
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Larcombe Lee; Hendricusdottir Rita; Attwood Teresa K.; Bacall F.; Beard Niall; Bellis L. J.; Dunn W.B.; Hancock John M.; Nenadic Aleksandra; Orengo Christine
ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR
2017 ►
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Pawlik Aleksandra; Gelder Celia W. G.; Nenadic Aleksandra; Palagi Patricia M.; Korpelainen Eija; Lijnzaad Philip; Marek Diana; Sansone Susanna-Assunta; Hancock John M.; Goble Carole A.
Developing a strategy for computational lab skills training through Software and Data Carpentry
2017 ►
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Horro Carlos; Cook Martin; Attwood Teresa K.; Brazas Michelle D.; Hancock John M.; Palagi Patricia M.; Corpas Manuel; Jiménez Rafael C.
BioCIDER
2017 ►
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Mier Pablo; Paladin Lisanna; Tamana Stella; Petrosian Sophia; Hajdu-Soltész Borbála; Urbanek Annika; Gruca Aleksandra; Plewczynski Dariusz; Grynberg Marcin; Hancock John M.
Disentangling the complexity of low complexity proteins
2020 ►
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Orengo Christine; Velankar Sameer; Wodak Shoshana; Zoete Vincent; Bonvin Alexandre M J J; Elofsson Arne; Feenstra K Anton; Gerloff Dietland L; Hamelryck Thomas; Hancock John M.
A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)
2020 ►
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Ison Jon; Ménager Hervé; Brancotte Bryan; Jaaniso Erik; Salumets Ahto; Raček Tomáš; Lamprecht Anna-Lena; Palmblad Magnus; Kalaš Matúš; Hancock John M.
Community curation of bioinformatics software and data resources
2020 ►
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Urh Kristian; Žlajpah Margareta; Zidar Nina; Boštjančič Emanuela
Identification and validation of new cancer stem cell-related genes and their regulatory microRNAs in colorectal cancerogenesis
2021 ►
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Bioinformatics
1998 ►
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Kristan Aleša; Gašperšič Jernej; Režen Tadeja; Kunej Tanja; Količ Rok; Vuga Andrej; Fink Martina; Žula Špela; Anžej Doma Saša; Preložnik-Zupan Irena; Pajič Tadej; Podgornik Helena; Debeljak Nataša
Genetic analysis of 39 erythrocytosis and hereditary hemochromatosis-associated genes in the Slovenian family with idiopathic erythrocytosis
2021 ►
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Salgado David; Armean Irina M.; Baudis Michael; Beltran Sergi; Capella-Gutierrez Salvadors; Carvalho-Silva Denise; Dominguez Del Angel Victoria; Dopazo Joaquín; Leskošek Branimir; Vidak Marko
The ELIXIR human copy number variations community
2020 ►
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Zaman Niyaz; Santhana Dass Serena; Parcq Persephone DU; Macmahon Suzanne; Gallagher Lewis; Thompson Lisa; Khorashad Jamshid S
The KDR (VEGFR-2) genetic polymorphism Q472H and c-KIT polymorphism M541L are associated with more aggressive behaviour in astrocytic gliomas
2020 ►
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Uhan Sara; Zidar Nina; Tomažič Aleš; Hauptman Nina
Hypermethylated promoters of genes UNC5D and KCNA1 as potential novel diagnostic biomarkers in colorectal cancer
2020 ►
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Rozman Damjana
Overview
2021 ►
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Režen Tadeja; Razpotnik Rok; Ferk Polonca; Juvan Peter; Rozman Damjana
From whole liver to single cell transcriptomics in sex-dependent liver pathologies
2021 ►
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Wolkenhauer Olaf
Systems medicine
2021 ►
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Gurwitz Kim T.; Gaur Prakash Singh; Bellis Louisa J.; Larcombe Lee; Alloza Eva; Balint Balint Laszlo; Botzki Alexander; Dimec Jure; Leskošek Branimir; Vidak Marko
A framework to assess the quality and impact of bioinformatics training across ELIXIR
2020 ►
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Šket Robert; Prevoršek Zala; Košeto Deni; Sebastijanović Aleksandar; Konda Simona; Bajuk Jerca; Stres Blaž
Analitski in konceptualni izzivi pri raziskovanju človeške črevesne mikrobiote za potrebe personalizirane večnivojske medicine
[Analytical and conceptual challenges in the investigation of human intestinal microbiota for the needs of personalized multidimensional medicine]
2019 ►
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Leskošek Branimir; Kastrin Andrej; Ferk Polonca; Cvitanović Tomaš Tanja; Rozman Damjana; Dimec Jure
Lifelong - e-learning platform for Systems Medicine
2019 ►
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Bolatti Elisa; Zorec Tomaž Mark; Montani María E.; Hošnjak Lea; Chouhy Diego; Viarengo Gastón; Casal Pablo E.; Barquez Rubén M.; Poljak Mario; Giri Adriana A.
A preliminary study of the virome of the South American free-tailed bats (Tadarida brasiliensis) and identification of two novel mammalian viruses
2020 ►
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Leskošek Branimir
ELIXIR-SI node - emprowering the Slovenian life science research community
2019 ►
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Vondrášek Jiří; Strachotová Anna; Bayerová Kateřina
ELIKSIR CZ annual conference, [11-12 November 2019, Kurdějov]
2019 ►
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Zupanič-Pajnič Irena
Molekularnogenetski vidiki preiskav starodavne DNA
[Molecular genetic aspects of ancient DNA analyses]
2019 ►
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Gruber Cesare EM; Bartolini Barbara; Castilletti Concetta; Mirazimi Ali; Hewson Roger; Christova Iva; Avšič-Županc Tatjana; Grunow Roland; Papa Anna
Geographical variability affects CCHFV detection by RT-PCR
2019 ►
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Urh Kristian; Žlajpah Margareta; Boštjančič Emanuela; Zidar Nina
Involvement of sulfatase 1 (SULF1) in colorectal cancer
2019 ►
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Kastrin Andrej; Dimec Jure; Vidak Marko; Ferk Polonca; Leskošek Branimir
Platforma ELIXIR-SI za učenje na daljavo (EeLP)
[ELIXIR-SI eLearning Platform (EeLP)]
2018 ►
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Žlajpah Margareta; Hauptman Nina; Boštjančič Emanuela; Zidar Nina
Differential expression of extracellular matrix-related genes DCN, EPHA4, FN1, SPARC, SPON2 and SPP1 in colorectal carcinogenesis
2019 ►
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Jovchevska Ivana; Zottel Alja; Šamec Neja; Mlakar Jernej; Sorokin Maxim; Nikitin Daniil; Buzdin Anton A.; Komel Radovan
High FREM2 gene and protein expression are associated with favorable prognosis of IDH-WT glioblastomas
2019 ►
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Köhler Sebastian; Carmody Leigh; Vasilevsky Nicole; Jacobsen Julius O.B.; Danis Daniel; Gourdine Jean-Philippe; Gargano Michael; Harris Nomi L.; Matentzoglu Nicolas; Sergouniotis Panagiotis I.
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources
2019 ►
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Ellingford Jamie M; Barton Stephanie J.; Bhaskar Sanjeev S; O'Sullivan James; Williams Simon G; Lamb Janine A; Panda Binay; Sergouniotis Panagiotis I.; Gillespie Rachel L.; Daiger Stephen P
Molecular findings from 537 individuals with inherited retinal disease
2016 ►
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Hauptman Nina; Jevšinek Skok Daša; Spasovska Elena; Boštjančič Emanuela; Glavač Damjan
Genes CEP55, FOXD3, FOXF2, GNAO1, GRIA4, and KCNA5 as potential diagnostic biomarkers in colorectal cancer
2019 ►
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Pérez-Wohlfeil Esteban; Torreno Oscar; Bellis Louisa J.; Fernandes Pedro; Leskošek Branimir; Trelles Oswaldo
Training bioinformaticians in High Performance Computing
2018 ►
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Pisanu Maria Elena; Maugeri-Saccà Marcello; Fattore Luigi; Bruschini Sara; Vitis De Claudia; Tabbì Eugenio; Bellei Barbara; Migliano Emilia; Kovacs Daniela; Camera Emanuela; Picardo Mauro; Jakopin Žiga
Inhibition of stearoyl-CoA desaturase 1 reverts BRAF and MEK inhibition-induced selection of cancer stem cells in BRAF-mutated melanoma
2018 ►
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Dimec Jure; Leskošek Branimir
ELIXIR-SI eLearning Platform (EeLP) for distance learning with bioinformatical tools and services
2018 ►
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Hauptman Nina; Boštjančič Emanuela; Žlajpah Margareta; Ranković Branislava; Zidar Nina
Bioinformatics analysis reveals most prominent gene candidates to distinguish colorectal adenoma from adenocarcinoma
2018 ►
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Jovchevska Ivana; Zottel Alja; Šamec Neja; Mlakar Jernej; Muyldermans Serge; Buzdin Anton A.; Komel Radovan
Combination of nanobody proteomics and OncoFinder bioinformatics in glioblastoma research and targeting
2018 ►
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Gorenjak Mario; Jezernik Gregor; Repnik Katja; Marčun-Varda Nataša; Potočnik Uroš
Pivotal role of high sensitivity variant calls and confirmation methods for next-generation sequencing findings
2018 ►
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Mankoč Ramuš Sara; Petrovič Danijel
Genetic variations and subclinical markers of carotid atherosclerosis in patients with type 2 diabetes mellitus
2018 ►
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Summit on translational bioinformatics
2017 ►
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Noto Alessia; Vitis Claudia De; Pisanu Maria Elena; Roscilli Giuseppe; Ricci Giulia; Catizone Angiolina; Sorrentino Giovanni; Chianese Giuseppina; Taglialatela-Scafati O.; Trisciuoglio Daniela; Del Bufalo Donatella; Di Martile Marta; Di Napoli Arianna; Ruco Luigi; Costantini Susan; Jakopin Žiga; Budillon Alfredo; Melino Gerry; Del Sal Giannino; Ciliberto G.; Mancini Rita
Stearoyl-CoA-desaturase 1 regulates lung cancer stemness via stabilization and nuclear localization of YAP/TAZ
2017 ►
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Morgan Sarah; Palagi Patricia M.; Fernandes Pedro; Koperlainen Eija; Dimec Jure; Marek Diana; Larcombe Lee; Rustici Gabriella; Attwood Teresa K.; Via Allegra
The ELIXIR-EXCELERATE Train-the-Trainer pilot programme
2017 ►
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Jiménez Rafael C.; Kuzak Mateusz; Alhamdoosh Monther; Barker Michelle; Batut Bérénice; Borg Mikael; Capella-Guiterrez Salvador; Hong Neil Chue; Cook Martin; Leskošek Branimir
Four simple recommendations to encourage best practices in research software
2017 ►
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Beard Niall; Cook Martin; Nenadic Aleksandra; Jimenez Rafael C.; Attwood Teresa K.; Morrison Norman; Gelder Celia W. G.; Coppens Frederik; Leskošek Branimir; Ison Jon
Bioschemas
2016 ►
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Hooft Rob; Jareborg Niclas; Coppens Frederik; Stockinger Heinz; Pergl Robert; Leskošek Branimir
Data management planning in ELIXIR
2016 ►
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Hendricusdottir Rita; Palagi Patricia M.; Gelder Celia W. G.; Larcombe Lee; Korpelainen Eija; Leskošek Branimir; Attwood Teresa K.; Morgan Sarah; Peterson Hedi; Upton Alex
The training platform
2016 ►
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Artaza Haydee; Hong Neil Chue; Corpas Manuel; Corpuz Angel; Hooft Rob; Jimenez Rafael C.; Leskošek Branimir; Olivier Brett G.; Stourac Jan; Svobodová-Vařeková Radka
Top 10 metrics for life science software good practices
2016 ►
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Attwood Teresa K.; Leskošek Branimir; Dimec Jure; Morgan Sarah; Mulder Nicola; Gelder Celia W. G.; Palagi Patricia M.
Defining a lingua franca for the ELIXIR/GOBLET e-learning ecosystem
2016 ►
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Leskošek Branimir; Dimec Jure; Javoršek Jan Jona; Kranjc Jure; Korpelainen Eija
ELIXIR Slovenia eLearning Platform (EeLP)
2016 ►
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Blagus Rok; Goeman Jelle J.
What (not) to expect when classifying rare events
2016 ►
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Briefings in bioinformatics
2000 ►
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Štajdohar Katja; Accetto Tomaž; Gasparič Aleš
Uporaba bioinformatike za razvoj metode identifikacije bakterije Bacillus subtilis KBL 001 v probiotičnih izdelkih
[Using bioinformatics for the development of method for identification of Bacillus subtilis KBL 001 in probiotic products]
2016 ►
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Kumuthini Judit; Mbiyavanga Mamana; Chimusa Emile; Pathak Jyotishman; Somervuo Panu; Schaik Ron H. N. van; Dolžan Vita; Mizzi Clint; Kalideen Kusha; Ramesar Raj S; Maček Milan; Patrinos George P.; Squassina Alessio
Minimum information required for a DMET experiment reporting
2016 ►
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Ison Jon; Rapacki Kristoffer; Ménager Hervé; Kalaš Matúš; Rydza Emil; Chmura Piotr; Anthon Christian; Beard Niall; Berka Karel
Tools and data services registry
2015 ►
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Blagus Rok; Lusa Lara
Joint use of over- and under-sampling techniques and cross-validation for the development and assessment of prediction models
2015 ►
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Blagus Rok; Lusa Lara
Boosting for high-dimensional two-class prediction
2015 ►
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Brinskelle-Schmal N.; Hawa Gerhard; Lukas A.; Marc Janja
Bioinformatics aided design of a highly specific TNFSF14 ELISA - Application for bone research
2006 ►
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Verbovšek Urška; Motaln Helena; Rotter Ana; Atai Nadia A.; Gruden Kristina; Noorden Cornelis J. F. van; Lah Turnšek Tamara
Expression analysis of all protease genes reveals cathepsin K to be overexpressed in glioblastoma
2014 ►
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Mora Marina; Angelini Corrado; Bignami Fabrizia; Bodin Anne-Mary; Crimi Marco; Di Donato Jeanne-Hélène; Felice Alex; Jaeger Cécile; Meznarič Marija
TheEuroBioBank Network
2014 ►
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Lazović Bojana; Horvat Simon
Bioinformatics analysis of regulatory features of MyD88, an adaptor protein of innate immunity, as a basis of efficient modification of its expression
2014 ►
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Rajčević Uroš; Knol Jaco C.; Piersma Sander; Bougnaud Sebastien; Fack Fred; Sundlisaeter Eirik; Søndenaa Karl; Myklebust Reidar; Pham Thang V.; Niclou Simone P.
Colorectal cancer derived organotypic spheroids maintain essential tissue characteristics but adapt their metabolism in culture
2014 ►
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Prevoršek Zala; Stylianou Ioannis Mastroufis; Horvat Simon
Fine genetic mapping of QTLS on mouse chromosome 15 in the polygenic model of obesity using bioinformatics tools
[Natančnejše genetsko kartiranje kvantitativnih lokusov na kromosomu 15 pri poligenem mišjem modelu debelosti z uporabo bioinformacijskih metod]
2006 ►
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Štupnik Tomaž; Pohar Perme Maja
Biostatistics and Bioinformatics I
2013 ►
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Kalko Sabina Graciela; Paco Sonia; Jou Cristina; Angels Rodríguez Maria; Meznarič Marija; Rogač Mihael; Jekovec-Vrhovšek Maja; Sciacco Monica; Moggio Maurizio; Fagiolari Gigiola
Transcriptomic profiling of TK2 deficient human skeletal muscle suggests a role for the p53 signalling pathway and identifies growth and differentiation factor-15 as a potential novel biomarker for mitochondrial myopathies
2014 ►
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Gonzalez-Galarza F. F.; Mack S. J.; Hollenbach J.; Vidan-Jeras Blanka
16th IHIW
2013 ►
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Institute for Biostatistics and Medical Informatics