biomedicina slovenica


"Bioinformatics" : 145

  1. Urh Kristian; Zidar Nina; Boštjančič Emanuela
    Bioinformatics analysis of RNA-seq data reveals genes related to cancer stem cells in colorectal cancerogenesis
    2022
  2. Balech Bachir; Brennan Lorraine; Carrillo de Santa Pau Enrique; Cavalieri Duccio; Coort Susan; D’Elia Domenica; Ove Dragsted Lars; Ferk Polonca; Hancock John M.; Leskošek Branimir
    The future of food and nutrition in ELIXIR
    2022
  3. Pavlič Ana; Hauptman Nina; Boštjančič Emanuela; Zidar Nina
    Long non-coding RNAs as potential regulators of EMT-related transcription factors in colorectal cancer
    2022
  4. Bairoch Amos; Cohen-Boulakia Sarah; Froidevaux Christine
    Data integration in the life sciences
    2008
  5. Gruenberger Michael; Alberts Rudi; Smedley Damian; Swertz Morris A.; Schofield Paul N.; Schughart Klaus; Hancock John M.
    Towards the integration of mouse databases - definition and implementation of solutions to two use-cases in mouse functional genomics
    2010
  6. Smith Barry
    ICBO, International Conference on Biomedical Ontology
    2011
  7. Kahlem Pascal; DiCara Alessandro; Durot Maxime; Hancock John M.; Klipp Edda; Schächter Vincent; Segal Eran; Xenarios Ioannis; Birney Ewan
    Strengths and weaknesses of selected modeling methods used in systems biology
    2011
  8. Yang Ning-Sun
    Systems and computational biology
    2011
  9. Hancock John M.; Gates Hilary
    The informatics of high-throughput mouse phenotyping
    2011
  10. Artaza Haydee; Hancock John M.; Jiménez Rafael C.; Corpas Manuel
    PIsCO
    2017
  11. Beck Tim; Morgan Hugh; Blake Andrew; Wells Sara; Hancock John M.; Mallon Ann-Marie
    Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data
    2009
  12. Webb Alex; Hancock John M.; Holmes Christopher C.
    Phylogenetic inference under recombination using Bayesian stochastic topology selection
    2009
  13. Smedley Damian; Swertz Morris A.; Wolstencroft Katy; Proctor Glenn; Zouberakis Michael; Bard Jonathan; Hancock John M.; Schofield Paul N.
    Solutions for data integration in functional genomics
    2008
  14. Hancock John M.; Mallon Ann-Marie
    Phenobabelomics - mouse phenotype data resources
    2007
  15. Green Eain C. J.; Gkoutos Georgios V.; Lad Heena V.; Blake Andrew; Weekes Joseph; Hancock John M.
    EMPReSS
    2005
  16. Gkoutos Georgios V.; Green Eain C. J.; Greenaway Simon; Blake Andrew; Mallon Ann-Marie; Hancock John M.
    CRAVE
    2005
  17. Gkoutos Georgios V.; Mallon Ann-Marie; Blake A.; Greenaway Simon; Hancock John M.; Davidson D.
    Ontologies for the description of mouse phenotypes
    2004
  18. Gkoutos Georgios V.; Mallon Ann-Marie; Hancock John M.; Davidson Duncan
    Using ontologies to describe mouse phenotypes
    2004
  19. Albà M. Mar; Laskowski Roman A.; Hancock John M.
    Detecting cryptically simple protein sequences using the SIMPLE algorithm
    2002
  20. Hancock John M.; Armstrong John S.
    SIMPLE34
    1994
  21. Hancock John M.; Zvelebil Marketa J.
    Concise encyclopaedia of bioinformatics and computational biology
    2014
  22. Hancock John M.; Zvelebil Marketa J.
    Dictionary of bioinformatics and computational biology
    2004
  23. Walakira Andrew; Ocira Junior; Duroux Diane; Fouladi Ramouna; Moškon Miha; Rozman Damjana; Van Steen Kristel
    Detecting gene‐gene interactions from GWAS using diffusion kernel principal components
    2022
  24. Barba Evaggelia; Tsermpini Evangelia Erini; Patrinos George P.; Koromina Maria
    Genome informatics pipelines and genome browsers
    2020
  25. Gašperšič Jernej; Dolžan Vita
    Viral and host genetic and epigenetic biomarkers related to SARS-CoV-2 cell entry, infection rate, and disease severity
    2022
  26. Tsermpini Evangelia Erini; Al-Mahayri Zeina N.; Ali Bassam R.; Patrinos George P.
    Clinical implementation of drug metabolizing gene-based therapeutic interventions worldwide
    2021
  27. Jerala Miha; Kojc Nika; Hauptman Nina
    Expression of fibrosis-related genes in liver and kidney fibrosis in comparison to inflammatory bowel diseases
    2022
  28. Kiraly Peter; Zupan Andrej; Matjašič Alenka; Jaki Mekjavić Polona
    Associations of single-nucleotide polymorphisms in Slovenian patients with acute central serous chorioretinopathy
    2022
  29. Rozman Damjana
    Systems medicine - basic concepts and research examples
    2021
  30. Jevšinek Skok Daša; Hauptman Nina; Jerala Miha; Zidar Nina
    Expression of cytokine-coding genes BMP8B, LEFTY1 and INSL5 could distinguish between ulcerative colitis and Crohn's disease
    2021
  31. Razpotnik Rok; Nassib Petra; Kunej Tanja; Rozman Damjana; Režen Tadeja
    Identification of novel RNA binding proteins influencing circular RNA expression in hepatocellular carcinoma
    2021
  32. Dharuri Harish; Henneman Peter; Demirkan Ayse; Klinken Jan Bert v; Mook-Kanamori Dennis Owen; Wang-Sattler Rui; Gieger Christian; Adamski Jerzy; Hettne Kristina M.; Roos Marco
    Automated workflow-based exploitation of pathway databases provides new insights into genetic associations of metabolite profiles
    2013
  33. Persson Bengt; Kallberg Yvonne; Bray James E.; Bruford Elspeth; Dellaporta Stephen L.; Favia Angelo D.; Gonzalez Duarte Roser; Jörnvall Hans; Kavanagh Kathryn L.; Adamski Jerzy
    The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative
    2009
  34. Molnos Sophie; Baumbach Clemens; Wahl Simone; Müller-Nurasyid Martina; Strauch Konstantin; Wang-Sattler Rui; Waldenberger Melanie; Meitinger Thomas; Adamski Jerzy; Kastenmüller Gabi
    pulver
    2017
  35. Schofield Paul N.; Hancock John M.
    Integration of global resources for human genetic variation and disease
    2012
  36. Becker Jeremie; Yau Christopher; Hancock John M.; Holmes Christopher C.
    NucleoFinder
    2013
  37. Hancock John M.; Game Alf; Ponting Chris; Goble Carole A.
    An open and transparent process to select ELIXIR Node Services as implemented by ELIXIR-UK
    2016
  38. Larcombe Lee; Hendricusdottir Rita; Attwood Teresa K.; Bacall F.; Beard Niall; Bellis L. J.; Dunn W.B.; Hancock John M.; Nenadic Aleksandra; Orengo Christine
    ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR
    2017
  39. Pawlik Aleksandra; Gelder Celia W. G.; Nenadic Aleksandra; Palagi Patricia M.; Korpelainen Eija; Lijnzaad Philip; Marek Diana; Sansone Susanna-Assunta; Hancock John M.; Goble Carole A.
    Developing a strategy for computational lab skills training through Software and Data Carpentry
    2017
  40. Horro Carlos; Cook Martin; Attwood Teresa K.; Brazas Michelle D.; Hancock John M.; Palagi Patricia M.; Corpas Manuel; Jiménez Rafael C.
    BioCIDER
    2017
  41. Mier Pablo; Paladin Lisanna; Tamana Stella; Petrosian Sophia; Hajdu-Soltész Borbála; Urbanek Annika; Gruca Aleksandra; Plewczynski Dariusz; Grynberg Marcin; Hancock John M.
    Disentangling the complexity of low complexity proteins
    2020
  42. Orengo Christine; Velankar Sameer; Wodak Shoshana; Zoete Vincent; Bonvin Alexandre M J J; Elofsson Arne; Feenstra K Anton; Gerloff Dietland L; Hamelryck Thomas; Hancock John M.
    A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)
    2020
  43. Ison Jon; Ménager Hervé; Brancotte Bryan; Jaaniso Erik; Salumets Ahto; Raček Tomáš; Lamprecht Anna-Lena; Palmblad Magnus; Kalaš Matúš; Hancock John M.
    Community curation of bioinformatics software and data resources
    2020
  44. Urh Kristian; Žlajpah Margareta; Zidar Nina; Boštjančič Emanuela
    Identification and validation of new cancer stem cell-related genes and their regulatory microRNAs in colorectal cancerogenesis
    2021
  45. Bioinformatics
    1998
  46. Kristan Aleša; Gašperšič Jernej; Režen Tadeja; Kunej Tanja; Količ Rok; Vuga Andrej; Fink Martina; Žula Špela; Anžej Doma Saša; Preložnik-Zupan Irena; Pajič Tadej; Podgornik Helena; Debeljak Nataša
    Genetic analysis of 39 erythrocytosis and hereditary hemochromatosis-associated genes in the Slovenian family with idiopathic erythrocytosis
    2021
  47. Salgado David; Armean Irina M.; Baudis Michael; Beltran Sergi; Capella-Gutierrez Salvadors; Carvalho-Silva Denise; Dominguez Del Angel Victoria; Dopazo Joaquín; Leskošek Branimir; Vidak Marko
    The ELIXIR human copy number variations community
    2020
  48. Zaman Niyaz; Santhana Dass Serena; Parcq Persephone DU; Macmahon Suzanne; Gallagher Lewis; Thompson Lisa; Khorashad Jamshid S
    The KDR (VEGFR-2) genetic polymorphism Q472H and c-KIT polymorphism M541L are associated with more aggressive behaviour in astrocytic gliomas
    2020
  49. Uhan Sara; Zidar Nina; Tomažič Aleš; Hauptman Nina
    Hypermethylated promoters of genes UNC5D and KCNA1 as potential novel diagnostic biomarkers in colorectal cancer
    2020
  50. Rozman Damjana
    Overview
    2021
  51. Režen Tadeja; Razpotnik Rok; Ferk Polonca; Juvan Peter; Rozman Damjana
    From whole liver to single cell transcriptomics in sex-dependent liver pathologies
    2021
  52. Wolkenhauer Olaf
    Systems medicine
    2021
  53. Gurwitz Kim T.; Gaur Prakash Singh; Bellis Louisa J.; Larcombe Lee; Alloza Eva; Balint Balint Laszlo; Botzki Alexander; Dimec Jure; Leskošek Branimir; Vidak Marko
    A framework to assess the quality and impact of bioinformatics training across ELIXIR
    2020
  54. Šket Robert; Prevoršek Zala; Košeto Deni; Sebastijanović Aleksandar; Konda Simona; Bajuk Jerca; Stres Blaž
    Analitski in konceptualni izzivi pri raziskovanju človeške črevesne mikrobiote za potrebe personalizirane večnivojske medicine
    [Analytical and conceptual challenges in the investigation of human intestinal microbiota for the needs of personalized multidimensional medicine]
    2019
  55. Leskošek Branimir; Kastrin Andrej; Ferk Polonca; Cvitanović Tomaš Tanja; Rozman Damjana; Dimec Jure
    Lifelong - e-learning platform for Systems Medicine
    2019
  56. Bolatti Elisa; Zorec Tomaž Mark; Montani María E.; Hošnjak Lea; Chouhy Diego; Viarengo Gastón; Casal Pablo E.; Barquez Rubén M.; Poljak Mario; Giri Adriana A.
    A preliminary study of the virome of the South American free-tailed bats (Tadarida brasiliensis) and identification of two novel mammalian viruses
    2020
  57. Leskošek Branimir
    ELIXIR-SI node - emprowering the Slovenian life science research community
    2019
  58. Vondrášek Jiří; Strachotová Anna; Bayerová Kateřina
    ELIKSIR CZ annual conference, [11-12 November 2019, Kurdějov]
    2019
  59. Zupanič-Pajnič Irena
    Molekularnogenetski vidiki preiskav starodavne DNA
    [Molecular genetic aspects of ancient DNA analyses]
    2019
  60. Gruber Cesare EM; Bartolini Barbara; Castilletti Concetta; Mirazimi Ali; Hewson Roger; Christova Iva; Avšič-Županc Tatjana; Grunow Roland; Papa Anna
    Geographical variability affects CCHFV detection by RT-PCR
    2019
  61. Urh Kristian; Žlajpah Margareta; Boštjančič Emanuela; Zidar Nina
    Involvement of sulfatase 1 (SULF1) in colorectal cancer
    2019
  62. Kastrin Andrej; Dimec Jure; Vidak Marko; Ferk Polonca; Leskošek Branimir
    Platforma ELIXIR-SI za učenje na daljavo (EeLP)
    [ELIXIR-SI eLearning Platform (EeLP)]
    2018
  63. Žlajpah Margareta; Hauptman Nina; Boštjančič Emanuela; Zidar Nina
    Differential expression of extracellular matrix-related genes DCN, EPHA4, FN1, SPARC, SPON2 and SPP1 in colorectal carcinogenesis
    2019
  64. Jovchevska Ivana; Zottel Alja; Šamec Neja; Mlakar Jernej; Sorokin Maxim; Nikitin Daniil; Buzdin Anton A.; Komel Radovan
    High FREM2 gene and protein expression are associated with favorable prognosis of IDH-WT glioblastomas
    2019
  65. Köhler Sebastian; Carmody Leigh; Vasilevsky Nicole; Jacobsen Julius O.B.; Danis Daniel; Gourdine Jean-Philippe; Gargano Michael; Harris Nomi L.; Matentzoglu Nicolas; Sergouniotis Panagiotis I.
    Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources
    2019
  66. Ellingford Jamie M; Barton Stephanie J.; Bhaskar Sanjeev S; O'Sullivan James; Williams Simon G; Lamb Janine A; Panda Binay; Sergouniotis Panagiotis I.; Gillespie Rachel L.; Daiger Stephen P
    Molecular findings from 537 individuals with inherited retinal disease
    2016
  67. Hauptman Nina; Jevšinek Skok Daša; Spasovska Elena; Boštjančič Emanuela; Glavač Damjan
    Genes CEP55, FOXD3, FOXF2, GNAO1, GRIA4, and KCNA5 as potential diagnostic biomarkers in colorectal cancer
    2019
  68. Pérez-Wohlfeil Esteban; Torreno Oscar; Bellis Louisa J.; Fernandes Pedro; Leskošek Branimir; Trelles Oswaldo
    Training bioinformaticians in High Performance Computing
    2018
  69. Pisanu Maria Elena; Maugeri-Saccà Marcello; Fattore Luigi; Bruschini Sara; Vitis De Claudia; Tabbì Eugenio; Bellei Barbara; Migliano Emilia; Kovacs Daniela; Camera Emanuela; Picardo Mauro; Jakopin Žiga
    Inhibition of stearoyl-CoA desaturase 1 reverts BRAF and MEK inhibition-induced selection of cancer stem cells in BRAF-mutated melanoma
    2018
  70. Dimec Jure; Leskošek Branimir
    ELIXIR-SI eLearning Platform (EeLP) for distance learning with bioinformatical tools and services
    2018
  71. Hauptman Nina; Boštjančič Emanuela; Žlajpah Margareta; Ranković Branislava; Zidar Nina
    Bioinformatics analysis reveals most prominent gene candidates to distinguish colorectal adenoma from adenocarcinoma
    2018
  72. Jovchevska Ivana; Zottel Alja; Šamec Neja; Mlakar Jernej; Muyldermans Serge; Buzdin Anton A.; Komel Radovan
    Combination of nanobody proteomics and OncoFinder bioinformatics in glioblastoma research and targeting
    2018
  73. Gorenjak Mario; Jezernik Gregor; Repnik Katja; Marčun-Varda Nataša; Potočnik Uroš
    Pivotal role of high sensitivity variant calls and confirmation methods for next-generation sequencing findings
    2018
  74. Mankoč Ramuš Sara; Petrovič Danijel
    Genetic variations and subclinical markers of carotid atherosclerosis in patients with type 2 diabetes mellitus
    2018
  75. Summit on translational bioinformatics
    2017
  76. Noto Alessia; Vitis Claudia De; Pisanu Maria Elena; Roscilli Giuseppe; Ricci Giulia; Catizone Angiolina; Sorrentino Giovanni; Chianese Giuseppina; Taglialatela-Scafati O.; Trisciuoglio Daniela; Del Bufalo Donatella; Di Martile Marta; Di Napoli Arianna; Ruco Luigi; Costantini Susan; Jakopin Žiga; Budillon Alfredo; Melino Gerry; Del Sal Giannino; Ciliberto G.; Mancini Rita
    Stearoyl-CoA-desaturase 1 regulates lung cancer stemness via stabilization and nuclear localization of YAP/TAZ
    2017
  77. Morgan Sarah; Palagi Patricia M.; Fernandes Pedro; Koperlainen Eija; Dimec Jure; Marek Diana; Larcombe Lee; Rustici Gabriella; Attwood Teresa K.; Via Allegra
    The ELIXIR-EXCELERATE Train-the-Trainer pilot programme
    2017
  78. Jiménez Rafael C.; Kuzak Mateusz; Alhamdoosh Monther; Barker Michelle; Batut Bérénice; Borg Mikael; Capella-Guiterrez Salvador; Hong Neil Chue; Cook Martin; Leskošek Branimir
    Four simple recommendations to encourage best practices in research software
    2017
  79. Beard Niall; Cook Martin; Nenadic Aleksandra; Jimenez Rafael C.; Attwood Teresa K.; Morrison Norman; Gelder Celia W. G.; Coppens Frederik; Leskošek Branimir; Ison Jon
    Bioschemas
    2016
  80. Hooft Rob; Jareborg Niclas; Coppens Frederik; Stockinger Heinz; Pergl Robert; Leskošek Branimir
    Data management planning in ELIXIR
    2016
  81. Hendricusdottir Rita; Palagi Patricia M.; Gelder Celia W. G.; Larcombe Lee; Korpelainen Eija; Leskošek Branimir; Attwood Teresa K.; Morgan Sarah; Peterson Hedi; Upton Alex
    The training platform
    2016
  82. Artaza Haydee; Hong Neil Chue; Corpas Manuel; Corpuz Angel; Hooft Rob; Jimenez Rafael C.; Leskošek Branimir; Olivier Brett G.; Stourac Jan; Svobodová-Vařeková Radka
    Top 10 metrics for life science software good practices
    2016
  83. Attwood Teresa K.; Leskošek Branimir; Dimec Jure; Morgan Sarah; Mulder Nicola; Gelder Celia W. G.; Palagi Patricia M.
    Defining a lingua franca for the ELIXIR/GOBLET e-learning ecosystem
    2016
  84. Leskošek Branimir; Dimec Jure; Javoršek Jan Jona; Kranjc Jure; Korpelainen Eija
    ELIXIR Slovenia eLearning Platform (EeLP)
    2016
  85. Blagus Rok; Goeman Jelle J.
    What (not) to expect when classifying rare events
    2016
  86. Briefings in bioinformatics
    2000
  87. Štajdohar Katja; Accetto Tomaž; Gasparič Aleš
    Uporaba bioinformatike za razvoj metode identifikacije bakterije Bacillus subtilis KBL 001 v probiotičnih izdelkih
    [Using bioinformatics for the development of method for identification of Bacillus subtilis KBL 001 in probiotic products]
    2016
  88. Kumuthini Judit; Mbiyavanga Mamana; Chimusa Emile; Pathak Jyotishman; Somervuo Panu; Schaik Ron H. N. van; Dolžan Vita; Mizzi Clint; Kalideen Kusha; Ramesar Raj S; Maček Milan; Patrinos George P.; Squassina Alessio
    Minimum information required for a DMET experiment reporting
    2016
  89. Ison Jon; Rapacki Kristoffer; Ménager Hervé; Kalaš Matúš; Rydza Emil; Chmura Piotr; Anthon Christian; Beard Niall; Berka Karel
    Tools and data services registry
    2015
  90. Blagus Rok; Lusa Lara
    Joint use of over- and under-sampling techniques and cross-validation for the development and assessment of prediction models
    2015
  91. Blagus Rok; Lusa Lara
    Boosting for high-dimensional two-class prediction
    2015
  92. Brinskelle-Schmal N.; Hawa Gerhard; Lukas A.; Marc Janja
    Bioinformatics aided design of a highly specific TNFSF14 ELISA - Application for bone research
    2006
  93. Verbovšek Urška; Motaln Helena; Rotter Ana; Atai Nadia A.; Gruden Kristina; Noorden Cornelis J. F. van; Lah Turnšek Tamara
    Expression analysis of all protease genes reveals cathepsin K to be overexpressed in glioblastoma
    2014
  94. Mora Marina; Angelini Corrado; Bignami Fabrizia; Bodin Anne-Mary; Crimi Marco; Di Donato Jeanne-Hélène; Felice Alex; Jaeger Cécile; Meznarič Marija
    TheEuroBioBank Network
    2014
  95. Lazović Bojana; Horvat Simon
    Bioinformatics analysis of regulatory features of MyD88, an adaptor protein of innate immunity, as a basis of efficient modification of its expression
    2014
  96. Rajčević Uroš; Knol Jaco C.; Piersma Sander; Bougnaud Sebastien; Fack Fred; Sundlisaeter Eirik; Søndenaa Karl; Myklebust Reidar; Pham Thang V.; Niclou Simone P.
    Colorectal cancer derived organotypic spheroids maintain essential tissue characteristics but adapt their metabolism in culture
    2014
  97. Prevoršek Zala; Stylianou Ioannis Mastroufis; Horvat Simon
    Fine genetic mapping of QTLS on mouse chromosome 15 in the polygenic model of obesity using bioinformatics tools
    [Natančnejše genetsko kartiranje kvantitativnih lokusov na kromosomu 15 pri poligenem mišjem modelu debelosti z uporabo bioinformacijskih metod]
    2006
  98. Štupnik Tomaž; Pohar Perme Maja
    Biostatistics and Bioinformatics I
    2013
  99. Kalko Sabina Graciela; Paco Sonia; Jou Cristina; Angels Rodríguez Maria; Meznarič Marija; Rogač Mihael; Jekovec-Vrhovšek Maja; Sciacco Monica; Moggio Maurizio; Fagiolari Gigiola
    Transcriptomic profiling of TK2 deficient human skeletal muscle suggests a role for the p53 signalling pathway and identifies growth and differentiation factor-15 as a potential novel biomarker for mitochondrial myopathies
    2014
  100. Gonzalez-Galarza F. F.; Mack S. J.; Hollenbach J.; Vidan-Jeras Blanka
    16th IHIW
    2013

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