Author/Editor		Kouter, Katarina; Zupanc, Tomaž; Videtič Paska, Alja
Title		Genome-wide DNA methylation in suicide victims revealing impact on gene expression
Type		članek
Vol. and No.		, št. Vol.
Publication year		2019
Volume		str. str.
ISSN		1573-2517 - Journal of affective disorders
Language		eng
Abstract		Background Suicidal behavior is a multifactorial, polygenic state that affects millions worldwide. It is a result of interplay between hereditary and environmental factors, tied together by epigenetics. Despite vast knowledge on suicidality complete mechanism and factors leading to suicide are unknown. However there is an indication between changes in DNA methylation patterns and suicidal behavior. Methods To identify differential methylation we formed a homogenous group of male suicide victims who died by hanging and control group. Altogether our study included 18 subjects in which two brain regions, Brodmann area 9 (9 suicide victims and 9 controls)) and hippocampus (6 suicide victims and 6 controls) were investigated using next-generation sequencing (NGS). Results Our results have shown several differences in methylation level between suicide victims and controls in both brain regions (> 25% difference in methylation and q-value < 0.01), with gene ontology pointing towards cell structural integrity and nervous system regulation. Additional gene expression analysis identified changes in two genes, ZNF714 (p-value = 0.002) and NRIP3 (p-value=0.046). Limitations Major limitation is small sample size. Our analysis was conducted on brain tissue including different cell types so the results are a representation of a methylation pattern for the whole brain tissue sample. Conclusions We performed a preliminary methylation study with single base pair resolution using NGS on one of the world populations with a very high suicide risk. Obtained results offer novel insights into altered methylation patterns in suicide victims, which could provide a starting point for further studies on clinical samples with highly expressed suicide risk.
Keywords		samomorilno vedenje epigenetika obešanje suicidal behavior epigenetics hanging